PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP06827
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 902aa    MW: 101646 Da    PI: 6.0232
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP06827genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.2e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI +          R+  ++k++w++
         OMP06827  5 KQKWTAEEEAALKAGVIKHGAGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    
MGAPKQKWTA EEEAALKAGV IKHGAGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSRDKTR LSIKRTSSIV KQEDNAMATA LVPSDEEIAD TKPIPVSTTT MQIPTSTKRS  120
IVRLDNLIME AITSLKEPGG SNKTTIAAYI EEQYWAPPDF KRLLSAKLKY LTACGRLIKV  180
KRRYRIAPTL SFPERRRNHS MLFVEGRQRI SPRFDRDDFN VLTKSQVDLE LAKMRTMSPK  240
EASAAAARAV AEAEAAIAEA EEAAREAEVA EADAEAAQAF ADAAMKTLKG RNNQKVQAGP  300
SYLAVATRMH FQRTAGLEQE IENLKKKLAS CTRENQNLQE ELSEAFRIKT QLADLHRLEV  360
AKNVEAEKQV KFFQGCVAAA FAERDHSIME AEKAKEKEEL MAKKFNEFQS RLEELTSNCL  420
EQSRHNNALQ IDLAKQEEEN ENLRKVVSKF YEIRQQATGE LEDANWDDQC TCLLLDPAEM  480
WSFNDSSTSK YISSLEEELE RVRSSVDDLR NKLRMGLEIE NHLKKKVREL ERKKVTSIKM  540
ILNRVIELRH YHSQHRTEIM NLLDMERSNV KEIVDAAEEN FRQFDAKGQN MQTDLNIDAI  600
ECKDVHMSTD AEAEPVSEVL DLNVLNVDER KADTSDALAQ ALQEKVAALL LLSQQEERHL  660
LEKNVNAALQ KKIEELQRNL LQVTNEKVKA LLELAQLKRK FQLLQEKSSN EMKQGSVLSE  720
VSDRRISTYE KDGKLKNLLK KTYLSRWVGA VDARGNAFEA QPNSMDFARM RIENATLKES  780
MESMDHLTST IHRLRLSLLK VTESITPEGR NINASEALDE IISEARLVKT ALGSSLPVSW  840
SAEGDGESIA GSRDTEPGDM IEDSSSEKLD SVSAAGFEMV DLLILAAQIL KERTKAGSLS  900
GS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.11e-99MYB_related family protein