PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP06867
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 642aa    MW: 71427 Da    PI: 8.9412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP06867genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07558607147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
         OMP06867 558 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 607
                      678999********************9988889**************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    
MVSETRLDYG FSGYQVPVFP RASRSARVRV PSRKKCGNNQ KHAFEILASV AGELLQESRY  60
FVPPDCKEDQ HGTPEITVVK DQEDERQLLN CSHSDQETYD DKTSLQRQIH ASNKFSNVQD  120
QSNLKSSSTL KNLNLSKNVC LADQSAKVDD ETASSSATVG ISSPESGEFF EGQVEDARAE  180
FSIIQSVDTL PVTGGLEMLE TDHKSPAFFC SESKLDASLF KDWITLGPSR YSNTVETVSR  240
DDDDEHFIGC TQAGTALKAF RLPSDLADQR VNNLSASRHW RVSPNLNGRT SFKNDGRRRS  300
SFHTGRTNYT RQRSQRISPF KKRKFFNQCS FTAPGRVFQF EDKFSSADKR SNGDKCNAAV  360
EVASSVASPH LPPGSRDRNV KLRIKSFKVP ELFVEIPTTA TVGSLKRTVM EAVTTVLGDG  420
LHVGIFLQGK KVRDDSKTLF QTGISQDHKH HHLGFTLEPK HTQIKPSQCS GEQGLTRHGT  480
SLTLDPGTSS AFLVPPGTDC ASGAESDLQV VSSLSNISAD VANPQPLVSI PAISVEALAV  540
VPFHHRPVHR EFVQRRIRRP FSVSEVEALV QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL  600
KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLAAHAYWSQ QQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315324QRISPFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-108MYB_related family protein