PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP07546
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 113aa    MW: 13356.4 Da    PI: 9.1207
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP07546genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.1e-181196384
              EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE CS
        B3  3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkl 84
               +++++   +++rl +p + + ++    +    ++ ++   d +g++W++++i r+ +g+     ++++GW +Fv++n L++gD++vFkl
  OMP07546 11 RKTVRPTEITNHRLLVPTEAMWAFllqvD---SNKLDIEALDVNGKTWNFRYITRG-PGShhpqPYFSRGWMKFVRDNSLQAGDTIVFKL 96
              55668899999*************97432...34568999************7644.3443677899**********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
MEEEKSVEIF RKTVRPTEIT NHRLLVPTEA MWAFLLQVDS NKLDIEALDV NGKTWNFRYI  60
TRGPGSHHPQ PYFSRGWMKF VRDNSLQAGD TIVFKLRPFI DPIYFIEVLR KNC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-11RAV family protein