PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP07547
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 210aa    MW: 24589.4 Da    PI: 10.3114
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP07547genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-10593186
              EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE.E-S CS
        B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk.ldg 86
              f k+l++ dv k+  l +p + ++ +  ++ + s+    ed +sgr W+++++ r k  +     v+++GW +Fvk ++L+egD v  + l++
  OMP07547  5 FTKQLSKTDVEKR--LAIPTSSLRGFnLNVDAYSVGFEAEDtKSGRIWQFQCTTRTK--GlyskPVISRGWVQFVKFKQLREGDRVAVYkLNQ 93
              8899988888775..9*******9997334456677777787899*******65332..2234699******************876552443 PP
2B347.63e-151051921094
               HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE..E-SSSEE..EE CS
        B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk..ldgrsefelvv 94 
               v ++  l +p + + ++  +++  +  +  l+d  g++W+++++ rkk+ +   v +kGW++Fvk+++L++gD vv++  ++g+s+f  ++
  OMP07547 105 VERKFKLAVPSEILWAFefDEV-DGAADFELKDIAGKKWQFRCSTRKKDFHpkPVVSKGWRRFVKDKRLQVGDKVVLYkdVEGDSSF--RI 192
               6666777777777777764333.3567899*************877777669999***********************333344555..44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MKLLFTKQLS KTDVEKRLAI PTSSLRGFNL NVDAYSVGFE AEDTKSGRIW QFQCTTRTKG  60
LYSKPVISRG WVQFVKFKQL REGDRVAVYK LNQHDEAQVQ YKIEVERKFK LAVPSEILWA  120
FEFDEVDGAA DFELKDIAGK KWQFRCSTRK KDFHPKPVVS KGWRRFVKDK RLQVGDKVVL  180
YKDVEGDSSF RIKTMKKVFK LFGEDVWLES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.26e-07RAV family protein