PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP10891

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 293aa MW: 32764.3 Da PI: 7.1755

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP10891	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	129	144	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 ++C+ C+k+F+r n+ OMP10891 129 FSCTVCNKTFNRYNNM 144 89********998776 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MQYSSTSFTA NNINRSSRGT IACYEAAHHH LDRIEDEDSI MLSLGPPGQG SRNPWSANKA 60 PGHFANPSAS ATATEQISGT VTVALHIGPP TSSIETASSS NSNDIINNVV EGQYWIPSPA 120 QILVGPTQFS CTVCNKTFNR YNNMQYRKGP ESLRGTKPAS SMLRLPCYCC AEGCKNNIEH 180 PRSRPLKDFR TLQTHYKRKH GAKPFACRKC AKPFAVRGDW RTHEKNCGKL WLCICGSDFK 240 HKRSLKDHVR AFGDGHSPHT VEYCEVEEED DHDYDDEDNI NEDESHDPLF FSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	1e-108	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMP10891