PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11099

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 263aa MW: 28710.8 Da PI: 7.1635

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11099	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H OMP11099 87 YTCTFCRREFRSAQALGGHMNVH 109 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MAAELGLLSL NQLQKLAARS QQNNQNHQLQ HQHRAPNPTP PSSWMWNPNN NKAQAQQPQE 60 DDDSWEVRAF AEDTGNVMGT TWPPRSYTCT FCRREFRSAQ ALGGHMNVHR RDRARLHQTQ 120 PAAAVAINPA SSSPTTTSSS TLLIPTQEFA TNGGLCLLYQ LPNPNGVFTS PPMNACSSES 180 PSTLLSISPY PSNNLMAAAP SINFPVTPPP GLNINYNSSS LCYSSKAEPS TTTTSADNIN 240 NKKETSIEEL DLELRLGHRP TTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	1e-42	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMP11099