PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11180

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 431aa MW: 49133 Da PI: 6.3813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11180	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	3.1e-12	215	266	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ OMP11180 215 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 266 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MLFCYKRDFF QANFTGLDYS LDHHHNHEDH QPRGIGHETS AAHNNGMIDY MLNNPHHHHH 60 HQQQQQISSS SGFCTTPSTS FDKLSFADVM QFAEFGPKLA LNQTRIPEEE TGIDPSGYFL 120 RFPVLNDKLD QDQSLMVPPS GIENVVMEEK GNNMMRSEDE EARVSDNASV QLRFLGDDHQ 180 DHNINVNQNK NPTPEAKNKR KRPRSVKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL 240 MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL YGEAGSRQMG DTSSTMAIQQ 300 QQQQQQQPFF PVQAAPMSLP NDQIKLVEFE TGLREETAEN KSCLADVEVK LLGFDAMIKI 360 LSRRRPGQLV KTIAALEDLQ LNILHTNITT IEQTVLYSFN VKVASESRFS AEDIASSVQQ 420 IFTFIHANSS M

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MLFCYKRDFF QANFTGLDYS LDHHHNHEDH QPRGIGHETS AAHNNGMIDY MLNNPHHHHH  60
HQQQQQISSS SGFCTTPSTS FDKLSFADVM QFAEFGPKLA LNQTRIPEEE TGIDPSGYFL  120
RFPVLNDKLD QDQSLMVPPS GIENVVMEEK GNNMMRSEDE EARVSDNASV QLRFLGDDHQ  180
DHNINVNQNK NPTPEAKNKR KRPRSVKTSE EVESQRMTHI AVERNRRKQM NEHLRVLRSL  240
MPGSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL YGEAGSRQMG DTSSTMAIQQ  300
QQQQQQQPFF PVQAAPMSLP NDQIKLVEFE TGLREETAEN KSCLADVEVK LLGFDAMIKI  360
LSRRRPGQLV KTIAALEDLQ LNILHTNITT IEQTVLYSFN VKVASESRFS AEDIASSVQQ  420
IFTFIHANSS M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	227	RMTHIAVERNRR
2	276	280	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-141	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMP11180