PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP11339
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family SBP
Protein Properties Length: 183aa    MW: 20486.9 Da    PI: 9.1169
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP11339genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.6e-4061138278
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.SEEETTT--SS--S-STTTT-------S--- CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
               Cq+++C+adls+ak+yh+rhkvC +hska+vvlv+g++qrfCqqCs rfh+l efDe+krsCrrrLa+hnerrrk++a
  OMP11339  61 CQADECNADLSDAKQYHKRHKVCAHHSKAQVVLVAGIRQRFCQQCSsRFHDLAEFDEAKRSCRRRLAGHNERRRKNSA 138
               *********************************************55****************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MGKVVKREAD NDEDEFELQF GGFTEDDDNK KRKNMNMIVG GSGRKGSIAT GGGAAGGLRY  60
CQADECNADL SDAKQYHKRH KVCAHHSKAQ VVLVAGIRQR FCQQCSSRFH DLAEFDEAKR  120
SCRRRLAGHN ERRRKNSAES HGDGSGQKGT EQLKDMICGQ VGDRGRMKLT IQENPTYKHF  180
QII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.12e-44SBP family protein