PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP11374
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 287aa    MW: 30253.6 Da    PI: 4.9864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP11374genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-16108157155
       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
               +gy+G+r  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+ +l+g
  OMP11374 108 PGYRGIR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAATAYDVAAIALKG 157
               79****6..668*********843...5***********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    
MANNPSTNVT PKEPPTPTVQ IPSQLSLLQQ QPQEPSPQPS FHGGSSLPVQ SPGSGRTSAL  60
SLPLGDDQSS KSPQPIGVLT SPPPTPRNFG MGKSSSSMAA AVQPGRHPGY RGIRSRSGKW  120
VSEIREPRKT TRIWLGTYPT PEMAATAYDV AAIALKGPDT DLNFPDMVHS YPKVASTSAT  180
DIRAAAASAA AARLPKPESA PSKKDSKKDG DKDKPENEEG ATATSSSSCC MESGSGQEFI  240
DEEALLNLPN LLADMAEGML VSPPRINSTP SDDSPENSDV ESLWTYT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.19e-29ERF family protein