PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11382

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LBD

Protein Properties

Length: 236aa MW: 26033.3 Da PI: 5.137

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11382	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.1	1.7e-39	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 aCaaCk++rrkC+++C+lap fp +++k+f n+hklFG+sn+ k +++l++ +r +am+s++y+A++ra+dPv G+++ i++lq+q+e ael+l++++ OMP11382 19 ACAACKYQRRKCNPNCILAPFFPPSRAKDFLNAHKLFGVSNIKKSIETLDPPQRAIAMKSIIYQANMRASDPVGGCYRYIFELQSQIEWITAELNLVNQR 118 7**********************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MHKNGDNNDN NNSSAASQAC AACKYQRRKC NPNCILAPFF PPSRAKDFLN AHKLFGVSNI 60 KKSIETLDPP QRAIAMKSII YQANMRASDP VGGCYRYIFE LQSQIEWITA ELNLVNQRLA 120 ICKAQAAAAA AAASQEQPLM EVGQEEEVNP ILGLEGLNNA YVDQQRHEAE KHDQGKVYEG 180 STSSLSQVYN VFDTNSVKLE MEASVPLSDI SEDIKPLLAV FDDKGAEKFP FDSKVC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	6e-37	LBD family protein

Link Out ? help Back to Top
Ensembl	OMP11382