PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11596

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 360aa MW: 40765 Da PI: 7.2345

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11596	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.6e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 lppGfrFhPtdeel+++yL kkv + ++++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++lvg OMP11596 16 LPPGFRFHPTDEELISHYLYKKVLDISFSA-RAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATDSGYWKATGKDKEIYR-GKSLVG 114 79************************99.89***********888999************************************.999* PP NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfykgrapkgek++Wvmheyrle OMP11596 115 MKKTLVFYKGRAPKGEKSNWVMHEYRLE 142 **************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MANIGLVGQE DEQMDLPPGF RFHPTDEELI SHYLYKKVLD ISFSARAIGE VDLNKSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATDSGYWKAT GKDKEIYRGK SLVGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKYSVHNL PKTAKNEWVI CRVFQKSSGG KKIHISGLVR 180 VDSFGNELGP SGLPPLMESS PYNGKSKPVA ESAYVPCFSN SIDVQRNQQE TIDHFNNPLL 240 PVSSNTTSDI FPRIPLSNSF YSAQPVPFPS NLQFPGSVLM QDQSILRALI ENHGSNMRQD 300 FKTERDQMVS VSQETGLTTD INTEISSVVS NLELGKRTFD EQEAPSTSAA PVDLDCFWHY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MANIGLVGQE DEQMDLPPGF RFHPTDEELI SHYLYKKVLD ISFSARAIGE VDLNKSEPWE  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATDSGYWKAT GKDKEIYRGK SLVGMKKTLV  120
FYKGRAPKGE KSNWVMHEYR LEGKYSVHNL PKTAKNEWVI CRVFQKSSGG KKIHISGLVR  180
VDSFGNELGP SGLPPLMESS PYNGKSKPVA ESAYVPCFSN SIDVQRNQQE TIDHFNNPLL  240
PVSSNTTSDI FPRIPLSNSF YSAQPVPFPS NLQFPGSVLM QDQSILRALI ENHGSNMRQD  300
FKTERDQMVS VSQETGLTTD INTEISSVVS NLELGKRTFD EQEAPSTSAA PVDLDCFWHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-173	NAC family protein

Link Out ? help Back to Top
Ensembl	OMP11596