PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11608

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 216aa MW: 24165.5 Da PI: 5.0842

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11608	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H OMP11608 38 YECTFCKRGFTNAQALGGHMNIH 60 99*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MESAGKQGSS DVSSEENERV DQVKGGGDTA TTTAKRSYEC TFCKRGFTNA QALGGHMNIH 60 RKDRAKAKQP STSSSSVPII TSDHHQPLMN DQELFMNPSY LTQFPTQVPS NSKYYPILEA 120 QRNNTYDHMY FQPPVSSPRV LQHGNYYDHS NDFVVPAGRT TSSQISLNMN EELLGANLSL 180 QIGPTYVDDD DDSEVRRGFM KEDEIDLELR LGHDPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	4e-15	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMP11608