PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11609

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 230aa MW: 25733.7 Da PI: 9.2588

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11609	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.3e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H OMP11609 67 YTCSFCKREFRSAQALGGHMNVH 89 9********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MMNQKEVPME KNSFSNSLKD HSVENKFTIK DHSNKLKDSW SSSNNNIKEQ SFGEDYLAGF 60 SWPPRSYTCS FCKREFRSAQ ALGGHMNVHR RDRARLRQSP PRVDHGQTQT HSHPPFLNLN 120 LNPNPNPNFC SSSSSSSLVS SPFPISSLSS TSSAAAAAFP CQMNKWRLNN NATATKSYFG 180 VKDYGCCNNK LVMKKTSGSG FVRLDLDLEI GLVSHDSKED LDLELRLGYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	3e-26	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMP11609