PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP11640
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 128aa    MW: 14818 Da    PI: 6.5139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP11640genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.6e-13494189
              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
        B3  1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89
              f k l +    ++ rl++p + ++++    +    ++ +l+++d+ g  W++++i  ++   + v++kGW eFv+a++Lk+ D vv+  d++ ++
  OMP11640  4 FTKLL-TQTDIER-RLSVPTHILNSIpfvdE--DDRHADLQVKDSGGGLWTFRCICrDGAYAKPVFSKGWLEFVHAKKLKVDDKVVLFKDKDdNQ 94
              44555.4444444.59*******99999743..347789***************875666666*****************999766543443244 PP
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    
MELFTKLLTQ TDIERRLSVP THILNSIPFV DEDDRHADLQ VKDSGGGLWT FRCICRDGAY  60
AKPVFSKGWL EFVHAKKLKV DDKVVLFKDK DDNQGAVSYR IEVRREVLRL MGQDIWIDVE  120
QLHLYGIG