PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11644

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 296aa MW: 32568.1 Da PI: 7.962

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11644	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H OMP11644 103 FSCNYCKREFTTSQALGGHQNAH 125 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MVKIIEDQCP SEASSISAIP SNMIPNQPLK ASSQTESSSP GRILLDLKLF NNNNDSTRES 60 MKELNFFNPM NTSSSHDHSK ESGDEGDDHE TSREKRSGKS RVFSCNYCKR EFTTSQALGG 120 HQNAHKQERA MAKRRNQGID NVDRHNFGHP PHYPYYTCPT YSQPFYGSLI NRSPLSVKYE 180 SMIHKPSYNS LTSSTGFHGF GHNWPRPAMV NPPPPSPLAI HYPPPMNING RFGISGPSNP 240 SRLEEIVAPR TGFGDASSLP NYIAINKPAG TDSLQSSNPS GSDQCDASGI DLSLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	4e-20	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMP11644