PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP11732
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB_related
Protein Properties Length: 91aa    MW: 10175.2 Da    PI: 7.7705
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP11732genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-081257245
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     g+WT+   + + +a + + ++   +W  +a+ +g g+t+ ++k ++ 
         OMP11732 12 GSWTAKQNKDFEKALAVYDKDtpdRWYNVAKAVG-GKTADEVKRHYE 57
                     89********************************.**********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    
MASSSMSSRG SGSWTAKQNK DFEKALAVYD KDTPDRWYNV AKAVGGKTAD EVKRHYELLV  60
EDVNHIESGH VPFPNYRTAT RGGNANDEEK R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-39MYB_related family protein