PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP11777

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 387aa MW: 43897.5 Da PI: 6.3838

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP11777	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	3e-13	200	251	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr l+P++ + ++ + a+i A++++k+L+ OMP11777 200 QRMTHIAVERNRRRQMNDYLNSLRALMPPS---YIQRGDQASIIGGAIDFVKELE 251 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MAHVQQKMKF LGEHLEVECL EQGFVNSESL RFGEEEEGEE SNFLSLEEKM PFLQMLQTVD 60 SPQLFSFKEP NFQTLLRMQH LKNNNNSQTF IPEMETQIQA LELESCVTHE ILDLHSPVKS 120 ETKDLNKTNP HSSSCFEVVS SESNQDHQPK SAKADNCSSR QANSGSSPPK NLTKSIPIAR 180 ERRKRKRTRP AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRALMPPSY IQRGDQASII 240 GGAIDFVKEL EQLLQSLEAQ KRMRRIEENG NSIMEIPQLE SGIGSEDGNC REERLKAESK 300 SSGGGTEIEV NVNVIHNHVN LKIQCPRRGG QLLQAIVTLE SLRLTVLHLN ITSSQASVLY 360 SFNLKMEDDC KLRSADEIAA AVHQIFS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MAHVQQKMKF LGEHLEVECL EQGFVNSESL RFGEEEEGEE SNFLSLEEKM PFLQMLQTVD  60
SPQLFSFKEP NFQTLLRMQH LKNNNNSQTF IPEMETQIQA LELESCVTHE ILDLHSPVKS  120
ETKDLNKTNP HSSSCFEVVS SESNQDHQPK SAKADNCSSR QANSGSSPPK NLTKSIPIAR  180
ERRKRKRTRP AKNKEEVESQ RMTHIAVERN RRRQMNDYLN SLRALMPPSY IQRGDQASII  240
GGAIDFVKEL EQLLQSLEAQ KRMRRIEENG NSIMEIPQLE SGIGSEDGNC REERLKAESK  300
SSGGGTEIEV NVNVIHNHVN LKIQCPRRGG QLLQAIVTLE SLRLTVLHLN ITSSQASVLY  360
SFNLKMEDDC KLRSADEIAA AVHQIFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	187	RRKRKR
2	201	212	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46810.1	4e-65	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMP11777