PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMP12125

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

G2-like

Protein Properties

Length: 526aa MW: 57586.7 Da PI: 6.4745

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMP12125	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.2	6.6e-32	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk+il++m+ kgLtl h+kSHLQkYRl OMP12125 41 KPRLRWTADLHDRFVDAVTQLGGPNKATPKAILRTMNQKGLTLFHLKSHLQKYRL 95 79****************************************************8 PP
2	Myb_DNA-binding	63.6	3.9e-20	43	94	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+++++++vdav+qlGg+ t+k+I rtm+ kg+tl ++ks++qky+ OMP12125 43 RLRWTADLHDRFVDAVTQLGGPnkaTPKAILRTMNqKGLTLFHLKSHLQKYR 94 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MDMYHPRLQA HLHHHQEEML KNLNHNGGIG EPCLVLTSDP KPRLRWTADL HDRFVDAVTQ 60 LGGPNKATPK AILRTMNQKG LTLFHLKSHL QKYRLGKQSG KDMSEGPKDG ISASYLLESP 120 NNSAPSLPSS DINDGYEVKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER KYMAMLERAC 180 KMLAGHFIGG GAVIETDDLG FGSKMTRNYT VDALGFYSQS AEVVNACGQD EEMPSGLHSQ 240 RADCSTESCL TSHESPGGLT MEGSPVEGEK KLQNLDSTSG SLVWGDAKKY RLAKYLPDSS 300 SDGKKADKKE TGDMLSNLDG SSGMQITEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY 360 LKKIIEEQQR LSGVLAEAPG SGASVPALGD NGLESDKKTD PATPAPTSES PLQDKAAKER 420 APTKSHSIEE SFSSHHEPLT PDSGCHVGSP AGSPKRENLM KKQRVSMAGG FAKPEMVLPH 480 QILESSISAS YQQSHSVFMT REEFDPSSGI SIRNDDQLDK ASGAEL

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MDMYHPRLQA HLHHHQEEML KNLNHNGGIG EPCLVLTSDP KPRLRWTADL HDRFVDAVTQ  60
LGGPNKATPK AILRTMNQKG LTLFHLKSHL QKYRLGKQSG KDMSEGPKDG ISASYLLESP  120
NNSAPSLPSS DINDGYEVKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER KYMAMLERAC  180
KMLAGHFIGG GAVIETDDLG FGSKMTRNYT VDALGFYSQS AEVVNACGQD EEMPSGLHSQ  240
RADCSTESCL TSHESPGGLT MEGSPVEGEK KLQNLDSTSG SLVWGDAKKY RLAKYLPDSS  300
SDGKKADKKE TGDMLSNLDG SSGMQITEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY  360
LKKIIEEQQR LSGVLAEAPG SGASVPALGD NGLESDKKTD PATPAPTSES PLQDKAAKER  420
APTKSHSIEE SFSSHHEPLT PDSGCHVGSP AGSPKRENLM KKQRVSMAGG FAKPEMVLPH  480
QILESSISAS YQQSHSVFMT REEFDPSSGI SIRNDDQLDK ASGAEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	8e-58	G2-like family protein

Link Out ? help Back to Top
Ensembl	OMP12125