PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP12218
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 205aa    MW: 21516.8 Da    PI: 4.7128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP12218genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183686155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
              + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f tae+Aa a++ a+++l+g
  OMP12218 36 PVYRGVRRRS-SGKWVSEIREPR----KpNRIWLGTFPTAEMAAIAYDVAALALKG 86
              68*****888.8*********94....478***********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MHYSKSNKGS SSGRGGSGSG GGAGGGSSSA ATGRHPVYRG VRRRSSGKWV SEIREPRKPN  60
RIWLGTFPTA EMAAIAYDVA ALALKGQDAE LNFPNSAASL PVPASTSPRD IQAAATSAAA  120
ALGAANDALF GNEDQNEARN NPILPDKSAA MDEFVDEDLL FDMPNVLVNM AEGMLLSPPR  180
LDINAPDQYP SADNLGDDEN LWKFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.19e-47ERF family protein