PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP12291
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NAC
Protein Properties Length: 337aa    MW: 37925.6 Da    PI: 4.3697
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP12291genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.45.7e-40281581128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
               +ppG+rF Ptd+elv +yL++k+++++l++ ++i++v+ y+ +P++L  +    +e+ewyfFs+rd+ky++g+r++r+t +gyWk tg dk++ + + +  
  OMP12291  28 MPPGYRFCPTDNELVEHYLNNKIHNHPLPM-NFIPQVKFYDNDPSQLIaNDKPLGETEWYFFSSRDRKYPNGSRPSRSTPNGYWKPTGVDKPIPAGSPNPL 127
               79****************************.99**************7444455899**************************************99999* PP

       NAM 101 glkktLvfy...kgrapkgektdWvmheyrl 128
               g k+tL fy   +g+++++++tdW mhey l
  OMP12291 128 GKKTTLDFYqgrHGDKNDSVRTDWKMHEYVL 158
               *********55446788899*********87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MEKNNSTEAS SSSSAATGNE FEEFLETMPP GYRFCPTDNE LVEHYLNNKI HNHPLPMNFI  60
PQVKFYDNDP SQLIANDKPL GETEWYFFSS RDRKYPNGSR PSRSTPNGYW KPTGVDKPIP  120
AGSPNPLGKK TTLDFYQGRH GDKNDSVRTD WKMHEYVLKD SANNSQPGNC MTLNNFVLCK  180
LYKNKYKTDK NYRDDDDQEG NNNIAAIEQQ PLMSINYISS SSLTEMPLPQ AQGTTVCNNI  240
SSSVTASQIN KEEASSSSLM LVDDQRINDH INNGDQFEDK AAVIQPNDDD DYLTYINALD  300
PITIIKDINS DDLCWDWDFL EDDGSAAPKD PTSAKGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-49NAC family protein