PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMP12365
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 79aa    MW: 8837.45 Da    PI: 10.6296
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMP12365genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.1e-27958150
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
              krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v+ifs +gklye +
  OMP12365  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVVIFSAHGKLYELA 58
              79*********************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    
MARGRVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVVIFSA HGKLYELATK  60
GTMQGLIEKY SKYTGGTQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-44MIKC_MADS family protein