PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G00560.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 228aa    MW: 24600.7 Da    PI: 9.8372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G00560.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-0940108455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.as................kapskKlsKaeiLekAveYIksLq 55 
                        + +E++RR +++    +L +l+P  a+                + +++ ++  + Le+A  YIk+L+
  ONIVA01G00560.1  40 ERKDVEKNRRLHMKGLCLKLSSLIPAaAPrrhhhhystsssssppSSTKEAVTQLDHLEQAAAYIKQLK 108
                      56899*********************555**************76666666****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MKSRKNSTTS TKAAGSCHTS SSGGGGGGGN CYSSSSSKME RKDVEKNRRL HMKGLCLKLS  60
SLIPAAAPRR HHHHYSTSSS SSPPSSTKEA VTQLDHLEQA AAYIKQLKGR IDELKKRKQQ  120
AAALTTSTSN GGGGGMPVVE VRCQDGTLDV VVVSEAIGEE RERERERAVR LHEVIGVLEE  180
EGAEVVNASF SVVGDKIFYT LHSQALCSRI GLDASRVSHR LRNLLLQY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.17e-19bHLH family protein