PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G02970.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family RAV
Protein Properties Length: 314aa    MW: 34967.1 Da    PI: 8.6476
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G02970.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.3e-1362110155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+ykGV   + +grW A+I++      r +r++lg+f  +e Aa+a++ a+++++g
  ONIVA01G02970.1  62 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRFRG 110
                      78****9888.8*********......44*************************98 PP
2B391.27.7e-29175268185
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk+ ae+h         +    +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL+ gD+v F+++
  ONIVA01G02970.1 175 FEKAVTPSDVGKLNRLVVPKQQAERHfpfplrrhsSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRS 268
                      89*****************************999855667999************************************************965 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MEQEAAMVVF SCNSGSDGSS STTDSKQEEE ELAAMEEDEL IHVVQAAELR LPSSTTATRP  60
SSRYKGVVPQ PNGRWGAQIY ERHARVWLGT FPDEEAAARA YDVAALRFRG RDAVTNRAPA  120
AEGASAGELA FLAAHSKAEV VDMLRKHTYD DELQQGLRRG SRAQPTPRWA REPLFEKAVT  180
PSDVGKLNRL VVPKQQAERH FPFPLRRHSS DAAGKGVLLN FEDGDGKVWR FRYSYWNSSQ  240
SYVLTKGWSR FVREKGLRPG DTVAFSRSAA AWGTEKHLLI DCKKMERNNL ATVDDDARVV  300
VKLFGVDIAG DKTR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-96RAV family protein