PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G02990.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

RAV

Protein Properties

Length: 369aa MW: 39652.9 Da PI: 10.3025

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G02990.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42	2.3e-13	68	116	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r++lg+f +e Aa+a++ a+++++g ONIVA01G02990.1 68 SRYKGVVPQP-NGRWGAQIYE------RhARVWLGTFPDEEAAARAYDVAALRYRG 116 78**9888.8*****......44***********************98 PP
2	B3	95.1	4.6e-30	183	281	1	86
EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+ tpsdv+k++rlv+pk++ae+h + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++v ONIVA01G02990.1 183 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrraassdsasAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIV 276 89**************************99998888755566999********************************************* PP EEE-S CS B3 82 Fkldg 86 F+++ ONIVA01G02990.1 277 FSRSA 281 *9664 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA 60 AAVAQQSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA ALRYRGRDAA 120 TNFPGAAASA AELAFLAAHS KAEIVDMLRK HTYADELRQG LRRGRGMGAR AQPTPSWARE 180 PLFEKAVTPS DVGKLNRLVV PKQHAEKHFP LRRAASSDSA SAAATGKGVL LNFEDGEGKV 240 WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTIVFSRS AYGPDKLLFI DCKKNNAAVA 300 ATTTCAGDER PTTTTSGAEP RVVRLFGVDI AGGDCRKRER AVEMGQEAFL LKRQCVVHQR 360 TPVLGALLL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGVVSFSSTS SGASTATTES GGAVRMSPEP VVAVAAAAQQ LPVVKGVDSA DEVVTSKPAA  60
AAVAQQSSRY KGVVPQPNGR WGAQIYERHA RVWLGTFPDE EAAARAYDVA ALRYRGRDAA  120
TNFPGAAASA AELAFLAAHS KAEIVDMLRK HTYADELRQG LRRGRGMGAR AQPTPSWARE  180
PLFEKAVTPS DVGKLNRLVV PKQHAEKHFP LRRAASSDSA SAAATGKGVL LNFEDGEGKV  240
WRFRYSYWNS SQSYVLTKGW SRFVREKGLR AGDTIVFSRS AYGPDKLLFI DCKKNNAAVA  300
ATTTCAGDER PTTTTSGAEP RVVRLFGVDI AGGDCRKRER AVEMGQEAFL LKRQCVVHQR  360
TPVLGALLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	4e-79	RAV family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G02990.1