PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G04320.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-X1
Protein Properties Length: 912aa    MW: 99952 Da    PI: 8.4577
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G04320.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.21.3e-06262279118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C   CH GpCppC
  ONIVA01G04320.1 262 CGIHRCPVDCHDGPCPPC 279
                      ****************** PP
2zf-NF-X116.51.8e-05369388119
         zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                      CG+HkC + CH+G C + C+
  ONIVA01G04320.1 369 CGRHKCPERCHRGSCVEtCR 388
                      ***************99997 PP
3zf-NF-X116.51.9e-05422441120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+H C + C+eG+C pCp+
  ONIVA01G04320.1 422 CGRHACRRRCCEGDCAPCPE 441
                      ******************96 PP
4zf-NF-X122.22.9e-07449468120
         zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                      CG+HkC ++CH+G C pCp+
  ONIVA01G04320.1 449 CGNHKCLSPCHRGACAPCPL 468
                      ******************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    
MPFSYAAAAS GSASSSRKPV PVAAAAARRP APSPAAAAAP APSPSNPSAV SDSDPSSYSS  60
SGEETDLTVS DPAAASVISS YLSVAGDGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD  120
PVWSCSASCF ALLHLHCIQS WAHQSSSAAP SPTWGCPKCR FPYPKSQTPT SYLCFCSKTV  180
DPAPDPWILP HSCGDVCGRR LNADRDSGCE HNCLLLCHPG PCPPCPAIVP NAMCFCGSHR  240
ETRRCSHQRY SCSGKCNKRL GCGIHRCPVD CHDGPCPPCA VRGKHKCECG ETMEERLCSE  300
RVFQCKRECG GMLQCGKHSC ERGCHAGKCG GCPLQGRRTC PCGKKDYPSL DCDAEAATCG  360
STCEKVLGCG RHKCPERCHR GSCVETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR  420
NCGRHACRRR CCEGDCAPCP EICDKRLRCG NHKCLSPCHR GACAPCPLMK TISCNCGQTF  480
FEVPCGTEKN QKPPKCSKKC NIARLCRHKL ECRPHKCHYG ACPPCKLICG EELSCGHRCK  540
LRCHGPIAPP NPEFTLKPIK RKKGKHIDST PGTPCPPCQE VVLVPCFGQH LGQERAILCS  600
KRRQFPCQNL CGNPLNCGNH YCTKACHVLQ IPLSQPEGDQ SAILSLASAS AFAEPCEECN  660
LPCQRVREPP CSHPCPLPCH LNDCPPCKAL VKRPCHCGAM VHAFECMYYN NLNATKQQKV  720
RSCGGPCHRK LPNCPHLCSE ICHPGQCPSV DQCMKKVNVR CACNNLKKEW ICQDVLKEYR  780
QSGRDPKQIP KNQYAVGLLA CGEDCVKKVK AADSELHLRK IQEIKTPAVE VENVPKRRKR  840
RNRGQESVES SKFQEIKAVA LKFLLVIFLC IIVVAGLYLL WKGVYRLSDW MNDMEEQRAR  900
QRHLKPGRFN NT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1835841PKRRKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0NF-X1 family protein