PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G06130.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NF-YC
Protein Properties Length: 238aa    MW: 25123.7 Da    PI: 4.1791
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G06130.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.41.7e-1411519917100
            NF-YC  17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr.tdifdflvdivprde 100
                      ++ +lPl r+k+i+++d d+k+++ ea  l++ a elf+  l+  +   a    rr+++   + aa  +   + dfl+d  p  e
  ONIVA01G06130.1 115 QRPALPLGRVKRIIRVDRDIKKVTNEAALLIAAATELFVGSLAAGAHRAASRRGRRAVRAVHVRAAAREhRPTADFLLDCLPAAE 199
                      5668***********************************************************98876515699*****999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MAAAAVADEV TEAMEQVEGE REEADAVADE AAEVMEQAEG EREEAIDAVA GEAGEVMKEV  60
VEGEREEANA MADEADEAME PEGEREEEAD AVADEATEPM EQVEGEGEDG DAATQRPALP  120
LGRVKRIIRV DRDIKKVTNE AALLIAAATE LFVGSLAAGA HRAASRRGRR AVRAVHVRAA  180
AREHRPTADF LLDCLPAAEE AAPARAAAAG PSRGGGRGEA KPLPCGTRRI DAFFQKTT