PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G07090.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 360aa MW: 37742.1 Da PI: 7.1516

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G07090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.6	1.1e-13	181	227	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f L+ +lP+ K +Ka+iL +A e+IksL+ ONIVA01G07090.1 181 QHTMSERKRREKLNDSFVALKAVLPTG-----SKKDKASILIRAREHIKSLE 227 599*********************6.....499*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDSSSWIHGY TNANATGANS GFMCGYAASP VEFPQQQQLI SMQMGMDDES AVYDGASMVG 60 DLLMASSSAH HAGAGSFQYS SSTTSSSASF RSASVSCIPE SSAAAAPELP AATGGAFSRY 120 ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAEA AAAPPSDNQL 180 QHTMSERKRR EKLNDSFVAL KAVLPTGSKK DKASILIRAR EHIKSLESKL SELEEKNREL 240 EARLASRPAA KNDKGETAAA EAGDETKRED LVEIEVTTTS GGSGVADAAA TGGDQETCCT 300 LNVDLRGGGG GGMSTTDVVL RTLQCLREQI GDGASLVAMS TSAGSGGRPP SANLTLQLKV

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDSSSWIHGY TNANATGANS GFMCGYAASP VEFPQQQQLI SMQMGMDDES AVYDGASMVG  60
DLLMASSSAH HAGAGSFQYS SSTTSSSASF RSASVSCIPE SSAAAAPELP AATGGAFSRY  120
ARHLRPRRPP KPGACGQRMF KTAMSVLANM HVAATYRRQY YYQQAAAAEA AAAPPSDNQL  180
QHTMSERKRR EKLNDSFVAL KAVLPTGSKK DKASILIRAR EHIKSLESKL SELEEKNREL  240
EARLASRPAA KNDKGETAAA EAGDETKRED LVEIEVTTTS GGSGVADAAA TGGDQETCCT  300
LNVDLRGGGG GGMSTTDVVL RTLQCLREQI GDGASLVAMS TSAGSGGRPP SANLTLQLKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	191	ERKRRE
2	187	192	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-14	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G07090.1