PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G07440.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 464aa MW: 47016.5 Da PI: 5.0346

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G07440.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.2	1.3e-07	358	398	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P a K++ a++L +A +Y++ L ONIVA01G07440.1 358 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 398 69****************966......*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MDRGFNEMIL SESVWNGGGG GGGGDGDGGA VVLPPEVGGV NAVDGSGMTM LERLVLDEAL 60 AAAILELQGI QAPGCGGGGC KVAVVPPPTA GDGGVEAAVA FAAMATGTPA YADVDADVLQ 120 RQRQHHHRHQ GAMGMAAEYD VAPATPAVTL SAVSPPPPPP AFATAAASVD GGGAMDATVF 180 SGIGNDDVVD AVSATVAMTT SQCERVRGGG GGGGCGRKQR RPGRKRKASE PTAAAAAADM 240 SSQDNPLCSL LASNTAGADG GIQIAFSTSA PASKRAKPSL SSSSSSISFD GRGPGGNCGG 300 GGDDDPLYEP DTEALAQVKE MIYRAAAMRP VTLGAEDAGE RPRRRNVRIS SDPQTVAARQ 360 RRERISERLR VLQKLVPGGA KMDTASMLDE AANYLRFLKS QIRELQTLDR RNYPNAAMSI 420 NTAAATTMAT SSSPTYNNSN AAMPAFAFPE TLGCGGGGGV EQLI

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MDRGFNEMIL SESVWNGGGG GGGGDGDGGA VVLPPEVGGV NAVDGSGMTM LERLVLDEAL  60
AAAILELQGI QAPGCGGGGC KVAVVPPPTA GDGGVEAAVA FAAMATGTPA YADVDADVLQ  120
RQRQHHHRHQ GAMGMAAEYD VAPATPAVTL SAVSPPPPPP AFATAAASVD GGGAMDATVF  180
SGIGNDDVVD AVSATVAMTT SQCERVRGGG GGGGCGRKQR RPGRKRKASE PTAAAAAADM  240
SSQDNPLCSL LASNTAGADG GIQIAFSTSA PASKRAKPSL SSSSSSISFD GRGPGGNCGG  300
GGDDDPLYEP DTEALAQVKE MIYRAAAMRP VTLGAEDAGE RPRRRNVRIS SDPQTVAARQ  360
RRERISERLR VLQKLVPGGA KMDTASMLDE AANYLRFLKS QIRELQTLDR RNYPNAAMSI  420
NTAAATTMAT SSSPTYNNSN AAMPAFAFPE TLGCGGGGGV EQLI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	364	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-34	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G07440.1