PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G09270.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 578aa MW: 60011.5 Da PI: 7.322

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G09270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	111.9	8.7e-35	211	311	2	86
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + ++++s++ ++s ++ ONIVA01G09270.1 211 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLDVLpawqptaggagagnaAAPPSSSTHPDSAEN 304 79**************************************************************888888888888776555555553333333 PP TCP 81 sas.nss 86 s++ ++ ONIVA01G09270.1 305 SDDqAQA 311 3330222 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
METRPPAAPA KLSYGIRRGG WTRIGAATVA AGKKAAGDLD PRHHHHRVTH GGDGGGVGGG 60 GSGGQEEADE QQQQQHDHHR LLQLHHHQGV QQDQEPPPVP VFHLQPASVR QLSGSSAEYA 120 LLSPMGDAGG HSHHHQHGFQ PQLLSFGGVG HHHHLHQFTA QPQPPAASHT RGRGGGGEIV 180 PATTTPRSRG GGGGGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ 240 FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LDVLPAWQPT AGGAGAGNAA APPSSSTHPD 300 SAENSDDQAQ AITVAHTAFD FAGGGSGGTS FLPPSLDSDA IADTIKSFFP MGGTAGGEAS 360 SSTTAAQSSA MGFQSYTPDL LSRTGSQSQE LRLSLQSLPD PMFHHQQHRH GGGGNGTTQQ 420 ALFSGAANYS FGGGAMWATE QQAQNQRMLP WNVPDPGGGG GAAYLFNVSQ QAAHMQAAAA 480 LGGHQSQFFF QRGPLQSSNQ PSERGWPETV EADNQMSHHQ GGLSPSVSAA IGFAAPGIGF 540 SGFRLPARIQ GDEEHNGGGG GNGDKPPPPS SVSSASHH

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

METRPPAAPA KLSYGIRRGG WTRIGAATVA AGKKAAGDLD PRHHHHRVTH GGDGGGVGGG  60
GSGGQEEADE QQQQQHDHHR LLQLHHHQGV QQDQEPPPVP VFHLQPASVR QLSGSSAEYA  120
LLSPMGDAGG HSHHHQHGFQ PQLLSFGGVG HHHHLHQFTA QPQPPAASHT RGRGGGGEIV  180
PATTTPRSRG GGGGGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ  240
FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LDVLPAWQPT AGGAGAGNAA APPSSSTHPD  300
SAENSDDQAQ AITVAHTAFD FAGGGSGGTS FLPPSLDSDA IADTIKSFFP MGGTAGGEAS  360
SSTTAAQSSA MGFQSYTPDL LSRTGSQSQE LRLSLQSLPD PMFHHQQHRH GGGGNGTTQQ  420
ALFSGAANYS FGGGAMWATE QQAQNQRMLP WNVPDPGGGG GAAYLFNVSQ QAAHMQAAAA  480
LGGHQSQFFF QRGPLQSSNQ PSERGWPETV EADNQMSHHQ GGLSPSVSAA IGFAAPGIGF  540
SGFRLPARIQ GDEEHNGGGG GNGDKPPPPS SVSSASHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	7e-59	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G09270.1