PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G11170.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 613aa MW: 66553.7 Da PI: 6.5384

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G11170.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.1e-12	459	505	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq ONIVA01G11170.1 459 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 505 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MEADEDGANG GTGGTWTDED RALTASVLGT DAFAYLTKGG GAISEGLVAA SLPVDLQNRL 60 QELVESDRPG AGWNYAIFWQ LSRTKSGDLV LGWGDGSCRE PRDGEMGPAA SAGSDEAKQR 120 MRKRVLQRLH SAFGGVDEED YAPGIDQVTD TEMFFLASMY FAFPRRAGGP GQVFAAGVPL 180 WIPNTERNVF PANYCYRGYL ANAAGFRTIV LVPFETGVLE LGSMQQVAES SDTLQTIRSV 240 FAGAIGNKAG VQRHEGSGPT DKSPGLAKIF GKDLNLGRPS AGPGTGVSEA DERSWEQRTG 300 GGSSLLPNVQ RGLQNFTWSQ ARGLNSHQQK FGNGILIVSN EATPRNNGVV DSSTATQFQL 360 QKAPPLQKLP QLQKSHQLVK PQQLVSQQQL QPQAPRQIDF SAGTSSKPGV LTKKPAGIDG 420 DGAEVDGLCK DEGPPPALED RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA 480 VVPNISKMDK ASLLGDAITY ITDLQKKLKE MEVERERLIE SGMIDPRDRT PRPEVDIQVV 540 QDEVLVRVMS PMESHPVRAI FQAFEEAEVH AGESKITSNN GTAVHSFIIK CPGAEQQTRE 600 KVIAAMSRVM NSG

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MEADEDGANG GTGGTWTDED RALTASVLGT DAFAYLTKGG GAISEGLVAA SLPVDLQNRL  60
QELVESDRPG AGWNYAIFWQ LSRTKSGDLV LGWGDGSCRE PRDGEMGPAA SAGSDEAKQR  120
MRKRVLQRLH SAFGGVDEED YAPGIDQVTD TEMFFLASMY FAFPRRAGGP GQVFAAGVPL  180
WIPNTERNVF PANYCYRGYL ANAAGFRTIV LVPFETGVLE LGSMQQVAES SDTLQTIRSV  240
FAGAIGNKAG VQRHEGSGPT DKSPGLAKIF GKDLNLGRPS AGPGTGVSEA DERSWEQRTG  300
GGSSLLPNVQ RGLQNFTWSQ ARGLNSHQQK FGNGILIVSN EATPRNNGVV DSSTATQFQL  360
QKAPPLQKLP QLQKSHQLVK PQQLVSQQQL QPQAPRQIDF SAGTSSKPGV LTKKPAGIDG  420
DGAEVDGLCK DEGPPPALED RRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA  480
VVPNISKMDK ASLLGDAITY ITDLQKKLKE MEVERERLIE SGMIDPRDRT PRPEVDIQVV  540
QDEVLVRVMS PMESHPVRAI FQAFEEAEVH AGESKITSNN GTAVHSFIIK CPGAEQQTRE  600
KVIAAMSRVM NSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	441	449	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	7e-72	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G11170.1