PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G12440.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C3H

Protein Properties

Length: 468aa MW: 49203.2 Da PI: 7.9939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G12440.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.1	1.9e-10	54	80	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+++H++ ONIVA01G12440.1 54 PGEADCVYYLRTGACGYGENCRYNHPR 80 57899********************96 PP
2	zf-CCCH	37.3	4.7e-12	104	130	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++++GtCk+G++Ck+ H++ ONIVA01G12440.1 104 PGQPVCEYYMKNGTCKFGSNCKYDHPR 130 5789*********************96 PP
3	zf-CCCH	33.4	7.6e-11	149	174	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ +tG+Ck+G++CkF+H++ ONIVA01G12440.1 149 GEKDCTYYVKTGHCKFGSTCKFHHPE 174 5789********************96 PP
4	zf-CCCH	37.3	4.6e-12	302	328	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ Ck++H++ ONIVA01G12440.1 302 PGQPECQYYLKTGSCKFGSACKYHHPQ 328 5789*********************97 PP
5	zf-CCCH	28.6	2.4e-09	350	374	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++ + G+Ck+G++CkF H++ ONIVA01G12440.1 350 SQPCAYYTQHGFCKFGPTCKFDHPM 374 679********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MEPYAAAEGG GGGGGGGGGS TDTGLEESMW RMGLGGGGGG GGEAVAAGRL PERPGEADCV 60 YYLRTGACGY GENCRYNHPR DRAAAAVLNG GGKTTHSAEY PERPGQPVCE YYMKNGTCKF 120 GSNCKYDHPR EGSVQAVMLN SSGYPLRSGE KDCTYYVKTG HCKFGSTCKF HHPEIGGVSE 180 TPNMYPPVQP QPISSSHPYQ HLAGWQMGRP PVLPGSFLSG SYPPMMLPST VVPMQGWNPY 240 ISPVNQVASA GGHQTVQAGP FYGLSHQGPS AAVTYGSQYA PLSSSTMPSS SSKQEPAFPA 300 RPGQPECQYY LKTGSCKFGS ACKYHHPQYL NTPKSNCMLS PLGLPLRPGS QPCAYYTQHG 360 FCKFGPTCKF DHPMGTLSYS PSASSITDLP IAPYPLNYAV APVAPPSSSS DLRPEYLLTK 420 EFSANQSASP GTTCGPAGAM LKAYAPHMLI RPQTSGAGGM VTTHGGEL

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MEPYAAAEGG GGGGGGGGGS TDTGLEESMW RMGLGGGGGG GGEAVAAGRL PERPGEADCV  60
YYLRTGACGY GENCRYNHPR DRAAAAVLNG GGKTTHSAEY PERPGQPVCE YYMKNGTCKF  120
GSNCKYDHPR EGSVQAVMLN SSGYPLRSGE KDCTYYVKTG HCKFGSTCKF HHPEIGGVSE  180
TPNMYPPVQP QPISSSHPYQ HLAGWQMGRP PVLPGSFLSG SYPPMMLPST VVPMQGWNPY  240
ISPVNQVASA GGHQTVQAGP FYGLSHQGPS AAVTYGSQYA PLSSSTMPSS SSKQEPAFPA  300
RPGQPECQYY LKTGSCKFGS ACKYHHPQYL NTPKSNCMLS PLGLPLRPGS QPCAYYTQHG  360
FCKFGPTCKF DHPMGTLSYS PSASSITDLP IAPYPLNYAV APVAPPSSSS DLRPEYLLTK  420
EFSANQSASP GTTCGPAGAM LKAYAPHMLI RPQTSGAGGM VTTHGGEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-115	C3H family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G12440.1