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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | ONIVA01G14890.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family | MYB | ||||||||
| Protein Properties | Length: 293aa MW: 32476.9 Da PI: 5.9876 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 48 | 2.9e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd l+ +v+ G g+W+ ar g++Rt+k+c++rw++yl
ONIVA01G14890.1 23 RGPWTVEEDAVLAGYVAANGEGRWNELARAAGLRRTGKSCRLRWLNYL 70
89********************************************97 PP
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| 2 | Myb_DNA-binding | 53.9 | 4.2e-17 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg +T++E++l+++++ ++G++ W++Ia++m+ gRt++++k++w++
ONIVA01G14890.1 76 RGDFTPQEQLLILELHFRWGNR-WSRIAQHMP-GRTDNEIKNYWRT 119
899*******************.*********.***********96 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 293 aa Download sequence |
MDAPCGWTTS AAAAVAEEED VRRGPWTVEE DAVLAGYVAA NGEGRWNELA RAAGLRRTGK 60 SCRLRWLNYL RPDVRRGDFT PQEQLLILEL HFRWGNRWSR IAQHMPGRTD NEIKNYWRTR 120 VQKHAKQLGC DVNSRQFKDV MRHLWMPRLV ERIHAAAASS ERAAPPPCAA APASHSGMCH 180 SPDPSTTTSS TAGSSVTHGE QFPSSTNHHL MTMASVTTAA ADWSSEQCGS GSATSTSVGI 240 SYDMFEGSWS ELLARAYDDD GADSSLLPDF QMADTGDNCW WSNLEDIWSQ QPY |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G48000.1 | 6e-79 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | ONIVA01G14890.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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