PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G18540.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 191aa MW: 19708.4 Da PI: 7.0992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G18540.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	51	73	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H ONIVA01G18540.1 51 FECKTCNRQFPSFQALGGHRASH 73 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MAYGKRPRQQ AEEAAFSLFD SSDMARIMLL FSGAHGGGGG AAAASPPERM FECKTCNRQF 60 PSFQALGGHR ASHKKPRLAD GDPAAEAPAK PKVHGCSICG LEFAVGQALG GHMRRHRAVM 120 ADGLGLGLSL GLGIGVVGQS DDDGGKKKAA AAAAAAELVF DLNAPAIEEE PDRARPAGLA 180 VEFPVVVDFP C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53600.1	1e-26	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G18540.1