PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22600.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 402aa    MW: 43912 Da    PI: 7.4725
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22600.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.15e-32941882103
                      HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F+ k+ye++ d++++ ++sw    +g sfvv+d++ +a  vLp++Fkh nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+l
  ONIVA01G22600.1  94 FVAKTYEMVADAATDAVVSWGpgGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQKHL 178
                      9********************655679*****************************************99.........*************** PP

                      XXXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkkse 103
                      l++ikr++ +
  ONIVA01G22600.1 179 LKNIKRRRVS 188
                      ******9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    
MLKPQTPRAR RAAHPNSHMA SSSSSSSLCR LLIPRPTTRR FSGGGGEGGM AAAAPVKREV  60
KPEAGEGWGG GDLGVVPPPP RPMEGLGEAG PAPFVAKTYE MVADAATDAV VSWGPGGSGA  120
SFVVWDPHAL AAGVLPRFFK HANFSSFVRQ LNTYGFRKVT PDRWEFANEA FLAGQKHLLK  180
NIKRRRVSKP LVDSQLRNKA SVVFGQPEAP GEVVSLKRDR AALRAEVIML KQQYNACKSQ  240
LIAMEEMVRN IERRQQQTIG FFAKVLTNPA FVQQVLLNYV NKNGLRGAAK RQRLMENEEQ  300
HADSPLNKGM EAASVMEADV SPGSTGCGTV GKVETTPMCN FQNIENMCDD VWEELDALPE  360
TGMEQEEKAG IGSFDVEEFV GRPCGWVDDC PYLVEPMQFV EH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185LKNIKRR
2183187KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.18e-72HSF family protein