PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22620.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 348aa    MW: 37793.4 Da    PI: 4.5357
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22620.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26069.86e-2222113199
           DUF260   1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +CaaCk+lrr+C+++ C lap+fpa+qp++++ v++ ++  +          e  +d++ss+vyeAea+ rdPv G +gv+ +l+ ++ +++a+
  ONIVA01G22620.1  22 RCAACKFLRRACSPEeCRLAPHFPASQPERLQSVERCWSWLTR--------AEYLDDILSSIVYEAEAWGRDPVWGPTGVVGALELEIGTARAD 107
                      6***********9877*******************99876444........455677************************************* PP

           DUF260  94 lallke 99 
                      la+l+ 
  ONIVA01G22620.1 108 LAVLQG 113
                      *99876 PP
2DUF260112.43e-35166257191
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++l r+C ++C lapyfpa q p++f nvh+lF+ +nvl++++++++eer+d+m+++vyeA+a+ardP yG++gv+++l+++l++++
  ONIVA01G22620.1 166 RCAACRYLSRSCWPECLLAPYFPAGQpPAQFGNVHRLFRLNNVLRMMEETRREERDDLMAAIVYEADAWARDPRYGVAGVVRSLTNELARVR 257
                      6***********************9978************************************************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MAEPSRSTSS GAAKKPSPRN PRCAACKFLR RACSPEECRL APHFPASQPE RLQSVERCWS  60
WLTRAEYLDD ILSSIVYEAE AWGRDPVWGP TGVVGALELE IGTARADLAV LQGQDQDQPP  120
AVATLPEPEL VVHPPTMAQD ESKPSSTTSS SSGTTTTTTK KKNKPRCAAC RYLSRSCWPE  180
CLLAPYFPAG QPPAQFGNVH RLFRLNNVLR MMEETRREER DDLMAAIVYE ADAWARDPRY  240
GVAGVVRSLT NELARVRLDE IAFHLLGTDE TYDGYKEEDA LAVDPVSGAQ AGIGVLGGSG  300
ADLQENTGIL LGADEPGPGE LAVDPIKDVF DIDRLLAVDD DLSSGTQP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.38e-19LBD family protein