PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G22650.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 125aa    MW: 13306.1 Da    PI: 6.7597
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G22650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260109.52.5e-3491111100
           DUF260   1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                      +CaaC++++r +C+++C+lapyfpa++p++f++++ l+G++ +l+ l+a+  ++ +r+++m+s+v+ ++ara dPv+Ga+gvi++lqq+l+++k
  ONIVA01G22650.1   9 PCAACAHQGRpSCPAGCPLAPYFPADRPERFEYANLLYGVDGILRRLEAAgpDPGTRRATMASIVFVSDARAADPVHGAYGVIRNLQQELASVK 102
                      7*********9***************************************766667************************************** PP

           DUF260  92 aelallkee 100
                      ae+a+++++
  ONIVA01G22650.1 103 AEIAAIRQK 111
                      ****99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    
MADPTPPPPC AACAHQGRPS CPAGCPLAPY FPADRPERFE YANLLYGVDG ILRRLEAAGP  60
DPGTRRATMA SIVFVSDARA ADPVHGAYGV IRNLQQELAS VKAEIAAIRQ KQQQAQPPPP  120
PEDGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-18LBD family protein