PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G22730.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 244aa MW: 26038.1 Da PI: 6.0254

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G22730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.4	1.4e-39	37	134	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rr+C+++C la+yfpa+qp++f+n+h+lFG +n+l+++++++ee r+dam+s+vye++a++ dPv Ga+g+++ l+q+l++lkael ONIVA01G22730.1 37 ACAACKHQRRRCTPECRLARYFPANQPARFRNAHRLFGIKNILRVMASASEELRDDAMKSVVYESDAWVIDPVGGAAGIVKGLSQELARLKAEL 130 7********************************************************************************************* PP DUF260 95 allk 98 +++k ONIVA01G22730.1 131 DAVK 134 9887 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGDEEAGPSS SGHSSPTSNT STTPPPQPPP PPPHPQACAA CKHQRRRCTP ECRLARYFPA 60 NQPARFRNAH RLFGIKNILR VMASASEELR DDAMKSVVYE SDAWVIDPVG GAAGIVKGLS 120 QELARLKAEL DAVKGLIELH RRAAAQQQQQ PPVAVASNGG FLPSPPPPPQ GQQQLLFLPP 180 PPPTMMLQDG HCDDETVEDD YLVDPPAVDA AAATSTAPER HGDGHAPTAN VKEEGNVDHT 240 SSTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	8e-28	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G22730.1