PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G22770.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

LBD

Protein Properties

Length: 230aa MW: 26148.1 Da PI: 9.6025

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G22770.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	70.2	4.3e-22	18	100	20	101
DUF260 20 pyfpa.eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +++ + +++ ++ n+++lFG++n+ +++a+ +e+r+d+mss+ yeA+ +ar+P++Ga+gv+++l++++e++ a+l++l+++l ONIVA01G22770.1 18 RVILHgDEKVRLLNAQHLFGTRNIRCFVQATLPEKRDDLMSSIKYEAQLWARNPQSGATGVMWHLERKVERELAKLSKLRQKL 100 444332668999******************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence
MRHLQGAEDG VLAGVPARVI LHGDEKVRLL NAQHLFGTRN IRCFVQATLP EKRDDLMSSI 60 KYEAQLWARN PQSGATGVMW HLERKVEREL AKLSKLRQKL EMCKNLAAKK SILEAKGVGV 120 RQVTSKEQEQ ERQYQACPAR ISAWTLRLFV HRSACEIPIS QTESRIACMQ FFGRAFMAFV 180 GQIQEEAINH DAEDAHYDFF PLQAHLVLDS PRNPHPLGRP PLTRSHNVHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	7e-09	LBD family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G22770.1