PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G22870.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 454aa MW: 46874.6 Da PI: 5.3617

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G22870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.7e-13	267	312	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr+llP++ K +K ++L A +Y+ksL+ ONIVA01G22870.1 267 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 312 7789*******************9.....699*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFDELMAG 60 GSSGDTRMVA MDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD 120 AAAALAMSTL AVPHPYPPPV AHGMFASGAG GGGGGGAVDD HEDAIMRAMM AVISSASASP 180 SSSGGSASSP TPFSRDSGAH HQPAGQPAMA APQHPRGGNG GHVVVKSSSS SGGLAVPMDQ 240 KPGGGGRGRQ QEEAAAASAT NSSQLYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV 300 LINAAKYLKS LETEITELEG TNTKLEKHIA GGGGAVDAAM RARRAQQRAK VQISKAADSQ 360 SQQLVNLTVM VMVECDVVEL VLHILECLRW MKEISVLSVY ADTYSPQLLL KAIANIKLQI 420 VGGDWNEASF HEAMTKAAND ATISCAPLAI TAAQ

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MDEVWCSLDS MPADIAAGIH QPPPPDLHDP SFWPAFADCA ASFIAGGGGD NACFDELMAG  60
GSSGDTRMVA MDDGDDGSGF LVGDAEAEHL MLSSSSPSSL SSGRSLSIDS AGSMSSFSLD  120
AAAALAMSTL AVPHPYPPPV AHGMFASGAG GGGGGGAVDD HEDAIMRAMM AVISSASASP  180
SSSGGSASSP TPFSRDSGAH HQPAGQPAMA APQHPRGGNG GHVVVKSSSS SGGLAVPMDQ  240
KPGGGGRGRQ QEEAAAASAT NSSQLYHMMS ERKRREKLND SFHTLRSLLP PCSKKDKTTV  300
LINAAKYLKS LETEITELEG TNTKLEKHIA GGGGAVDAAM RARRAQQRAK VQISKAADSQ  360
SQQLVNLTVM VMVECDVVEL VLHILECLRW MKEISVLSVY ADTYSPQLLL KAIANIKLQI  420
VGGDWNEASF HEAMTKAAND ATISCAPLAI TAAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	276	ERKRRE
2	272	277	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-22	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G22870.1