PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G24550.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 465aa    MW: 49741.6 Da    PI: 6.9302
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G24550.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.99.2e-12129185155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  ONIVA01G24550.1 129 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 185
                      57*******************5444.2455536655.779999**************98 PP
2AP247.44.7e-15228279155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  ONIVA01G24550.1 228 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 279
                      57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    
MDMDMSSAYP HHWLSFSLSN NYHHGLLEAL STTSAPPLGE EGPAEGAPKM EDFLGGLGGG  60
GGAVAAAPAA APEDQLSCGE LGSIAAGFLR RYPAPENAGG VTIAMATDAA AELADPARRT  120
AETFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA  180
LKYWGPTTTT NFPVANYETE LEEMKSMTRQ EFIASLRRKS SGFSRGASIY RGVTRHHQHG  240
RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMSR YDVDSILNSD  300
LPVGGGAATR ASKFPSDPSL PLPSPAIPPS EKDYWSLLAL HYHHHQQQQQ QQFPASAFDT  360
YGCSSGVNVD FTMGTSSHSG SNSNSSSSSA IWGTAAGAAM GRQQNGGSSN KQSNSYSGNN  420
IPYAAAAAMT SGSALYGGST GSNGTWVASN TSTAPHFYNY LFGME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-117AP2 family protein