PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G27030.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

MYB

Protein Properties

Length: 228aa MW: 25501.6 Da PI: 7.1469

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G27030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.7e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv ++ q G g+W+ ar g++R +k+c++rw++yl ONIVA01G27030.1 16 KGPWTLEEDLILVSYISQNGEGSWDNLARSAGLNRNGKSCRLRWLNYL 63 79********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	69	112	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eEd + +++ ++G++ W++Ia++++ gRt++++k++w++ ONIVA01G27030.1 69 RGSITPEEDMVIRELHSRWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112 7889****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MATRMCGRAG EPAVRKGPWT LEEDLILVSY ISQNGEGSWD NLARSAGLNR NGKSCRLRWL 60 NYLRPGVRRG SITPEEDMVI RELHSRWGNR WSKIAKHLPG RTDNEIKNYW RTKIHRKPRG 120 RSQLLQEPRE DAMGMGMSTT TSEAASTSAS SGQSQASPGV WDEYMQASSF PHPELVSFAA 180 DHHLEMAGVG EVAAAAAAQF VPTEFGFNDG FWNFVDNFWE TMPVSDVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	1e-58	MYB family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G27030.1