PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G29060.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

WOX

Protein Properties

Length: 533aa MW: 54742.4 Da PI: 7.3957

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G29060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52	1.2e-16	67	127	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e+ ++ ++l ++ +++V++WFqNr+ + k+ ONIVA01G29060.1 67 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIPRIRMQLqeygQVGDANVFYWFQNRKSRSKN 127 89***************99***********************************995 PP
2	Wus_type_Homeobox	110.2	1.1e-35	66	128	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei ri+++L+eyG+++d+NVfyWFQNrk+R+++k ONIVA01G29060.1 66 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 128 579**********************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE 60 ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQEYGQVG DANVFYWFQN 120 RKSRSKNKLR SGGTGRAGLG LGGNRASAPA AAHREAVAPS FTPPPPILPA PQPVQPQQQL 180 VSPVAAPTSS SSSSSDRSSG SSKPARATST QAMSVTTAMD LLSPLAAACH QQMLYQGQPL 240 ESPPAPAPKV HGIVPHDEPV FLQWPQSPCL SAVDLGAAIL GGQYMHLPVP APQPPSSPGA 300 AGMFWGLCND VQAPNNTGHK SCAWSAGLGQ HWCGSADQLG LGKSSAASIA TVSRPEEAHD 360 VDATKHGLLQ YGFGITTPAV HVDVTSSAAG VLPPVPSSPS PPNAAVTVAS VAATASLTDF 420 AASAISAGAV ANNQFQGLAD FGLVAGACSG AGAAAAAAAP EAGSSVAAVV CVSVAGAAPP 480 LFYPAAHFNV RHYGDEAELL RYRGGSRTEP VPVDESGVTV EPLQQGAVYI VVM

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MASSNRHWPS MFRSKHATQP WQTQPDMAGS PPSLLSGSSA GSAGGGGYSL KSSPFSSVGE  60
ERVPDPKPRW NPRPEQIRIL EAIFNSGMVN PPRDEIPRIR MQLQEYGQVG DANVFYWFQN  120
RKSRSKNKLR SGGTGRAGLG LGGNRASAPA AAHREAVAPS FTPPPPILPA PQPVQPQQQL  180
VSPVAAPTSS SSSSSDRSSG SSKPARATST QAMSVTTAMD LLSPLAAACH QQMLYQGQPL  240
ESPPAPAPKV HGIVPHDEPV FLQWPQSPCL SAVDLGAAIL GGQYMHLPVP APQPPSSPGA  300
AGMFWGLCND VQAPNNTGHK SCAWSAGLGQ HWCGSADQLG LGKSSAASIA TVSRPEEAHD  360
VDATKHGLLQ YGFGITTPAV HVDVTSSAAG VLPPVPSSPS PPNAAVTVAS VAATASLTDF  420
AASAISAGAV ANNQFQGLAD FGLVAGACSG AGAAAAAAAP EAGSSVAAVV CVSVAGAAPP  480
LFYPAAHFNV RHYGDEAELL RYRGGSRTEP VPVDESGVTV EPLQQGAVYI VVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	6e-44	WOX family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G29060.1