PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G29520.2
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HB-other
Protein Properties Length: 244aa    MW: 25767.5 Da    PI: 6.2896
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G29520.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1849103357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      kR   +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k
  ONIVA01G29520.2  49 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 103
                      688999***********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MDDGDGAAPA EGSAASTPPP APPAAAAAAA AAVSAGSTGA SGSGEKTVKR MMKSPYQLEV  60
LEKTYAVEQY PSETLRAELS AKIGLSDRQL QMWFCHRRLK DRKPPTKRQR REEEAAAVPL  120
MAPPPVLPPP ALPLSSGELL IGASSPYDEP PLPPVHSRRG AGRSSAVPRL SAPDIGRRYY  180
EPLPVMLPPP PVASMQLMPS ELRVIHSVES QLGEPLRDDG PVLGIDFDPL PPGSFGAPIV  240
VEIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.24e-39HB-other family protein