PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G32020.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 473aa MW: 50738.4 Da PI: 8.4746

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G32020.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.4e-13	327	373	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI++L+ ONIVA01G32020.1 327 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 373 799*********************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MSWSETDAAL FAAVLGHDAA HHLATTPPHL DAPEGSPSSA ELQARLHDLV ERQGGAWTYG 60 IFWQESRGAG AASGRAARAV LGWGDGHCRD GAGHGEVGAA ERSVARKRVL LRLHALYGGG 120 DEDGADYALR LDRVTGAEMY FLASMYFSFP EGSGGPGRAL ASGRHAWADV DPHPSGSGSA 180 PGWYVRSSLA QSAGLRTVVF LPCKGGVLEL GSVVAIRETP EVLRAIQSAM RAVPAPPEDF 240 MRIFGKDLSP GRPSQPMGCD APWTPRLVVQ TTPVRPAKKE VVKAKPAEPP KSLDFSKANV 300 QEQAGGEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PKISKMDKAS 360 LLSDAIAYIQ ELEARLRGDA PVPARADGPA VEVKAMQDEV VLRVTTPLDE HPISRVFHAM 420 RESQISVVAS DVAVSDDAVT HTLMVRSAGP ERLTAETVLA AMSRGVSVTT PSP

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MSWSETDAAL FAAVLGHDAA HHLATTPPHL DAPEGSPSSA ELQARLHDLV ERQGGAWTYG  60
IFWQESRGAG AASGRAARAV LGWGDGHCRD GAGHGEVGAA ERSVARKRVL LRLHALYGGG  120
DEDGADYALR LDRVTGAEMY FLASMYFSFP EGSGGPGRAL ASGRHAWADV DPHPSGSGSA  180
PGWYVRSSLA QSAGLRTVVF LPCKGGVLEL GSVVAIRETP EVLRAIQSAM RAVPAPPEDF  240
MRIFGKDLSP GRPSQPMGCD APWTPRLVVQ TTPVRPAKKE VVKAKPAEPP KSLDFSKANV  300
QEQAGGEERR PRKRGRKPAN GREEPLNHVE AERQRREKLN QRFYALRAVV PKISKMDKAS  360
LLSDAIAYIQ ELEARLRGDA PVPARADGPA VEVKAMQDEV VLRVTTPLDE HPISRVFHAM  420
RESQISVVAS DVAVSDDAVT HTLMVRSAGP ERLTAETVLA AMSRGVSVTT PSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	309	317	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	4e-58	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G32020.1