PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G35730.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 457aa MW: 48345.1 Da PI: 7.3462

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G35730.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.5	4.8e-34	137	247	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssaseceaesssssasnsssg... 88 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai+el++ + + + a++++ +a ++ + ONIVA01G35730.1 137 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDELPDRaeaP---PPPAAASTEQPEATEQATStsy 227 689**************************************************************5441...3222111222111111111223 PP TCP 89 ...................k 89 + ONIVA01G35730.1 228 gfgnttggtmtsaasaaagS 247 34445555554444333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MSGFTNKDGR QNLAPCFNFR SSPFRLTVGE RELKLEEDKN QLSKGLDPWT SNPTASASTL 60 HYLLQEKERA QQAHEQLQIY QQQQGFGSFL QHRIRQPASR GPGGGGGGGD GGGSSGESTP 120 VDALATAFGA GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL AAHTAIRFYD VQDRLGYDRP 180 SKAVDWLMRN AKAAIDELPD RAEAPPPPAA ASTEQPEATE QATSTSYGFG NTTGGTMTSA 240 ASAAAGSFLP HSLGADRVSD SVKSLFPSSS TASGAASAGH DEYRGSPPDL LSRTTSNQQP 300 QELCLTLQSN QHQIFSHVSS NHHGMISSAG VPGWPDHSQR MQAWHAPENS TGDGRGGGNG 360 DGYMFAMPSR QGLDQSQLFS HGEPLQSSGR GWASARAWLD PLPVAAIHHQ PSTMAAGQVG 420 FGHLVGGAGG GGGFMGFLAP AAQRLEGEEE HGSEVIR

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MSGFTNKDGR QNLAPCFNFR SSPFRLTVGE RELKLEEDKN QLSKGLDPWT SNPTASASTL  60
HYLLQEKERA QQAHEQLQIY QQQQGFGSFL QHRIRQPASR GPGGGGGGGD GGGSSGESTP  120
VDALATAFGA GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL AAHTAIRFYD VQDRLGYDRP  180
SKAVDWLMRN AKAAIDELPD RAEAPPPPAA ASTEQPEATE QATSTSYGFG NTTGGTMTSA  240
ASAAAGSFLP HSLGADRVSD SVKSLFPSSS TASGAASAGH DEYRGSPPDL LSRTTSNQQP  300
QELCLTLQSN QHQIFSHVSS NHHGMISSAG VPGWPDHSQR MQAWHAPENS TGDGRGGGNG  360
DGYMFAMPSR QGLDQSQLFS HGEPLQSSGR GWASARAWLD PLPVAAIHHQ PSTMAAGQVG  420
FGHLVGGAGG GGGFMGFLAP AAQRLEGEEE HGSEVIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	3e-37	TCP family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G35730.1