PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G38180.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

C2H2

Protein Properties

Length: 489aa MW: 50828.9 Da PI: 9.6787

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G38180.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.6e-05	248	270	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ Fs ++ L+ H H ONIVA01G38180.1 248 SCHRCGEQFSKWEALEAHHLAkH 270 7*****************87666 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA 60 AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN 120 PIAHEVVLST NSRCELKITG FGGCGGLAAA AAAGGGVLAS PHEADGDGAV VSSFVGTLRP 180 GTPGPGWSHG LQYSGSCRGS MRCTPPRSPN VLLDSRDAAA AGVTAHRASC EDAVKSFGKG 240 GGGGGGLSCH RCGEQFSKWE ALEAHHLAKH AVTELVEGDS SRKIVEIICR TSLLKSESSC 300 VRIERVFKVH NTQRTLARFE EYREAVKLKA SKLPKKHPRC LADGNELLRF HGATLSCALG 360 GAAGSSSLCA SDKCAVCRII RHGFSAKKEG KAGVGVFTTS TSGRAYESIE ASAGAVVGGD 420 DPAATRKALL VCRVIAGRVH KPLENLKEFA GQTGFDSLAG KVGPYSNIEE LYLLNPRALL 480 PCFVVICKA

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MGERRRRASA VAGGRAEDEK AASAPAAAAP APTVWFALKR SLHCRSEPSE VHVPRPKAVA  60
AAAAGGGGHL SAIVTKRAAP RSGCSRSIAN LRDVIHGSKR HPERPPSCSP RSIGSSEFLN  120
PIAHEVVLST NSRCELKITG FGGCGGLAAA AAAGGGVLAS PHEADGDGAV VSSFVGTLRP  180
GTPGPGWSHG LQYSGSCRGS MRCTPPRSPN VLLDSRDAAA AGVTAHRASC EDAVKSFGKG  240
GGGGGGLSCH RCGEQFSKWE ALEAHHLAKH AVTELVEGDS SRKIVEIICR TSLLKSESSC  300
VRIERVFKVH NTQRTLARFE EYREAVKLKA SKLPKKHPRC LADGNELLRF HGATLSCALG  360
GAAGSSSLCA SDKCAVCRII RHGFSAKKEG KAGVGVFTTS TSGRAYESIE ASAGAVVGGD  420
DPAATRKALL VCRVIAGRVH KPLENLKEFA GQTGFDSLAG KVGPYSNIEE LYLLNPRALL  480
PCFVVICKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-128	C2H2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G38180.1