PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G39780.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

AP2

Protein Properties

Length: 426aa MW: 46361.8 Da PI: 8.8801

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G39780.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.4	4.8e-10	78	135	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s ykGV +++ +g+++A+++d +n rkr + g ++t+e Aa+ ++ a++k++g ONIVA01G39780.1 78 SIYKGVARHRGSGKYEAHLWDkQGWNPnqTRKRGRQGAYDTEEAAARTYDLAALKIWG 135 57*****************555533445599999*****************987 PP
2	AP2	50.5	5e-16	178	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV ++ +grW+A+I + g +k+ +lg+f+t eeAa a++ a+ +l+g ONIVA01G39780.1 178 SKYRGVAKHHHNGRWEARIGRaV---G-KKYLYLGTFDTQEEAATAYDLAAIQLRG 229 89**************99966...2.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MVSMRKKKKA FAVAAATTLL SPPRSSSSSS SSTASSCIVP PRTESGKKKS KHRKRAKDGT 60 GGDDDAAAVA AAPRKGSSIY KGVARHRGSG KYEAHLWDKQ GWNPNQTRKR GRQGAYDTEE 120 AAARTYDLAA LKIWGSDHVL NFPIDTYRKE LERMQRMTRE EYLATLRRKS SGFSRGVSKY 180 RGVAKHHHNG RWEARIGRAV GKKYLYLGTF DTQEEAATAY DLAAIQLRGR SAVTNFDASC 240 YTYTDHLPPP PPPQPPSVCK TEPELEPPQP AAPPGSESLL RPKMEPCDDW EQPAICPSLR 300 DADDADHAIA EILPALCMDR ADFEARYPAR RARDAAADGW STSSDDVAAA SVDDDVLRSL 360 PDDVGFVDDV ESLFLDAPGP AAAAAAPMPD DVERAVQRAP SAASRRANAA AVSYAISSLA 420 SGRWWY

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MVSMRKKKKA FAVAAATTLL SPPRSSSSSS SSTASSCIVP PRTESGKKKS KHRKRAKDGT  60
GGDDDAAAVA AAPRKGSSIY KGVARHRGSG KYEAHLWDKQ GWNPNQTRKR GRQGAYDTEE  120
AAARTYDLAA LKIWGSDHVL NFPIDTYRKE LERMQRMTRE EYLATLRRKS SGFSRGVSKY  180
RGVAKHHHNG RWEARIGRAV GKKYLYLGTF DTQEEAATAY DLAAIQLRGR SAVTNFDASC  240
YTYTDHLPPP PPPQPPSVCK TEPELEPPQP AAPPGSESLL RPKMEPCDDW EQPAICPSLR  300
DADDADHAIA EILPALCMDR ADFEARYPAR RARDAAADGW STSSDDVAAA SVDDDVLRSL  360
PDDVGFVDDV ESLFLDAPGP AAAAAAPMPD DVERAVQRAP SAASRRANAA AVSYAISSLA  420
SGRWWY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-75	AP2 family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G39780.1