PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G40310.1
Organism
Oryza sativa f. spontanea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 229aa    MW: 25513.6 Da    PI: 6.2753
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G40310.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.66.7e-1034762058
                     S-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS CS
             WRKY 20 fprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnh 58
                       + YYrCt++   gCp+ k+ve+  +edp ++ ++Y++eH++
  ONIVA01G40310.1 34 AMKCYYRCTYHqdhGCPASKHVEQHnSEDPPLFRVIYTNEHTC 76
                     5678******98999*******9852689************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MVKRSDNMDS SSECSRGAHK RLLQDSRSYD QENAMKCYYR CTYHQDHGCP ASKHVEQHNS  60
EDPPLFRVIY TNEHTCGTSN SASDYMASSM QIQQIADASL RKAQAAERLR KAEVETPRLM  120
HFPPPRCSGG YNMAMKEEKD VIVSSLLTVI RGCHIAESAG NNSAAALPVN RPPPAVARSD  180
HYSCSYAISP ELLPASDDLT LDFMLDSVLD PHWVEPLDLA WLKESTHTG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-10WRKY family protein