PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G43060.1

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 875aa MW: 94515 Da PI: 6.2496

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G43060.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00026	678	715	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq ONIVA01G43060.1 678 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 715 77899**********6.....5899999*******9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA 60 MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG 120 QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQVM EEAAFIDHVR SLFQQLGSST 180 AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHL EDLAGGGNTY NDDMINHQFR HQKSPASTIQ 240 SFNPVQQFYA GPTFCCPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHSKTS 300 NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKM 360 DDLLSQDCLV GCQASNATSV NRKFQTMSIV DNTKLQDGSY AIPHAALVDS TQYSDCFQSL 420 LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN 480 DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA 540 IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT 600 EGPAAGSRQS SSNIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ CKRSDEIGKS 660 NRKRSRPGES ARPRPKDRQM IQDRIKELRE IVPNSAKCSI DTLLEKTIKH MLFLQNVAKH 720 ADKLKGSGEP KIVSHEEGLL LKDNFEGGAT WAFEVGTRSM TCPIIVEDLN PPRQMLVEML 780 CKERGIFLEI ADQIRGLGLT ILKGVMEVRK DKIWARFAVE ANKDVTRMEI FLSLVHLLEP 840 STGSSILSAG VENTSLPRDS FFPSSIPATG FSNCL

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence

MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHSHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQVM EEAAFIDHVR SLFQQLGSST  180
AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHL EDLAGGGNTY NDDMINHQFR HQKSPASTIQ  240
SFNPVQQFYA GPTFCCPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHSKTS  300
NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKM  360
DDLLSQDCLV GCQASNATSV NRKFQTMSIV DNTKLQDGSY AIPHAALVDS TQYSDCFQSL  420
LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN  480
DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA  540
IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT  600
EGPAAGSRQS SSNIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ CKRSDEIGKS  660
NRKRSRPGES ARPRPKDRQM IQDRIKELRE IVPNSAKCSI DTLLEKTIKH MLFLQNVAKH  720
ADKLKGSGEP KIVSHEEGLL LKDNFEGGAT WAFEVGTRSM TCPIIVEDLN PPRQMLVEML  780
CKERGIFLEI ADQIRGLGLT ILKGVMEVRK DKIWARFAVE ANKDVTRMEI FLSLVHLLEP  840
STGSSILSAG VENTSLPRDS FFPSSIPATG FSNCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	5e-55	bHLH family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G43060.1