PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA01G48250.3

Organism

Oryza sativa f. spontanea

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

M-type_MADS

Protein Properties

Length: 215aa MW: 23588.2 Da PI: 10.5335

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA01G48250.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	80.1	1.5e-25	62	111	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rie+k rqv fskRr+g++KKA+EL LCdaeva+++fs+ gklyeyss ONIVA01G48250.3 62 RIEDKASRQVRFSKRRAGLFKKAFELALLCDAEVALLVFSPAGKLYEYSS 111 8***********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MGAPHARPSI PSSSSPTSPH HHTTTHTHAR LRFPPPTRGG EGGELGFFGA GMARRGRVQL 60 RRIEDKASRQ VRFSKRRAGL FKKAFELALL CDAEVALLVF SPAGKLYEYS SSSIEGTYDR 120 YQQFAGARRD LNEGSTSINS DENASIHSRL RDISAWSLQN NADESDANQL EKLEKLLTNT 180 LRDTKSKKML AKQNGEGSRS RANSSGSRGQ EEGSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	1e-26	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	ONIVA01G48250.3